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. We now specify which periods will be the focus of the free-response questions. We streamlined the practices and skills that are assessed on the exams. New long essay and DBQ rubrics—featuring simplified language that clarifies the tasks students need to accomplish in these timed essays. Hello, please help me find/create small SAM files (e.g. With less than 10 reads) to help me: 1. Better understand the SAM file format, and 2. Test bamliquidator (which I helped to develop, but note that my background is in Computer Science not Biology).

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About Usamp Free Files File

Hello, please help me find/create small SAM files (e.g. with less than 10 reads) to help me:

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1. better understand the SAM file format, and
2. test bamliquidator (which I helped to develop, but note that my background is in Computer Science not Biology)

For example, to test handling of duplicate reads I manually typed up this example based on the SAM spec (tabs not preserved):

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I hope this is correct, but having lots of tiny SAM examples could help me more quickly and confidently understand the SAM spec so I can generate better test cases.

I am about to create test cases with paired end reads with gaps, and before doing so I hope I might find more tiny SAM examples and/or better resources given my background.

I have found this link useful for manually creating SAM files: http://genome.ucsc.edu/goldenPath/help/bam.html

Thanks

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Downloads and Storage

What software can I download?

Certain software is available for download free of charge when accessed with your NetID.

USF Application Gateway

All USF students have access to the apps.usf.edu application gateway. Students will be able to use over 40 different software applications for their personal and academic use, just by logging in with their USF NetID. Elective merit badges. Apps.usf.edu can be accessed from any computer with a web browser at anytime, anywhere, including the computer labs on campus. Demo release. The application gateway is funded by the Student Technology Fee. Please make sure you are saving your file

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UStoreFiles is a central file storage location for use by all USF students. With the S drive, students can save their work in one central location from any computer. Students are given the initial disk space quota of 4 gigabytes. Access UStoreFiles from the Tampa campus labs, Application Gateway, or your home computer.





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